Bacterial leaching method offers significant advantages in the leaching of chalcopyrite, including low cost, low energy consumption, simple equipment requirements, and zero emissions, making it more aligned with the sustainable development needs of modern industry. However, a prominent issue in the practical application of bacterial leaching is its relatively low leaching efficiency, which is mainly caused by the passivation phenomenon occurring during the bacterial leaching process, thus reducing the efficiency of copper extraction. This paper provides an overview of the mechanisms of action, passivation mechanisms, and enhancement methods in the bacterial leaching of chalcopyrite. It first elaborates on the three modes of action in the bacterial leaching of chalcopyrite: contact, non-contact, and synergistic actions, as well as the composition of the passivation layer formed during the leaching process and the mechanisms of passivation phenomenon formation, involving jarosite, elemental sulfur, and copper poly-sulfides. Then, it summarizes various enhancement methods for improving the efficiency of bacterial leaching of chalcopyrite according to the classifications of chemistry, physics, and biology, including adjusting the redox potential, adding metal cations, using chlorides, mixed culture of bacteria, physical field enhancement, surfactants, light, and carbonaceous materials. The core of these methods is to control the redox potential to avoid the formation of mineral surface passivation layers. Finally, the advantages and limitations of these methods are summarized, providing important references for the development of novel, environmentally friendly, and efficient chalcopyrite bacterial leaching technologies.