Covalent organic frameworks (COFs) are a type of porous organic polymers with periodic two-dimensional (2D) or three-dimensional (3D) network structures that are designed and assembled by covalently connected structural units, which have the characteristics of high specific surface area, low density, highly ordered periodic structure and easy functionalization. Compared with single-pore COFs, hierarchically porous COFs have hierarchical pore structure, different pore environments, easily accessible active sites, excellent mass transfer and diffusion performance, and show broad application prospects in the fields of gas separation and storage, environmental improvement, photoelectric, biomedicine, catalysis and so on. However, the structural diversity of COFs with hierarchical porosities is still limited due to their harsh synthesis conditions. In this paper, the research progress of COFs with hierarchical porosities is systematically reviewed from the aspects of reaction types, design strategies, synthesis methods, functional modification and application fields. Moreover, the development trend of developing more monomers, bonding types and topologies, expanding more modification methods and giving full play to the advantages of hierarchical pore structure is put forward. In the future, on the basis of continuous exploration and research, more hierarchically porous COFs with new topologies, continuously improve performance and more new applications can be developed, and the rapid, efficient and low-cost processing and molding of COFs with hierarchical porosities can be achieved. As a result, they would play an irreplaceable role in the fields of energy, biology, environment, catalysis and so on.